Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs12624782 chr20:4769795 C/T 7.85E-5 106 13.1 26.4 1.5 KM Plot
LAML rs12692115 chr2:127423104 C/T 0.000153 111 15.23 13.1 0 KM Plot
LAML rs12714368 chr2:3225538 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs12777021 chr10:967270 T/C 6.36E-5 111 15.23 16.17 5.1 KM Plot
LAML rs12777800 chr10:1070361 G/A 1.64E-5 111 13.15 20.3 2.55 KM Plot
LAML rs12781329 chr10:962504 G/A 4.43E-5 110 15.23 14.63 5.1 KM Plot
LAML rs12808728 chr11:119723399 G/A 9.54E-5 111 15.23 12.2 0 KM Plot
LAML rs12870992 chr13:21846019 A/G 1.09E-8 111 0 14.17 16.17 KM Plot
LAML rs12920588 chr16:70807815 C/T 0.000125 110 14.13 16.3 0 KM Plot
LAML rs12939390 chr17:28635688 T/C 0.000169 110 19.82 16.17 6.1 KM Plot
LAML rs12941223 chr17:28623098 T/C 0.000169 110 19.82 16.17 6.1 KM Plot
LAML rs12945042 chr17:28571928 C/T 9.66E-5 110 19.28 16.77 6.12 KM Plot
LAML rs12949747 chr17:28584358 C/T 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs12973258 chr19:19488718 T/C 0.000128 111 16.3 9.13 0 KM Plot
LAML rs12975490 chr19:12550071 A/G 1.87E-5 111 6.13 22.37 13.1 KM Plot